Index

_

__enter__() (alpine.trainers.feature_extractor.FeatureExtractor method) __exit__() (alpine.trainers.feature_extractor.FeatureExtractor method) __getitem__() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method) __init__() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.coordinate_datasets.CoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method) (alpine.losses.loss_functions.MSELoss method) (alpine.metrics.ssim.SSIM method) (alpine.models.ffn.FFN method) (alpine.models.ffn.PosEncoding method) (alpine.models.nonlin.nonlin.Gauss method) (alpine.models.nonlin.nonlin.HOSC method) (alpine.models.nonlin.nonlin.Nonlinear method) (alpine.models.nonlin.nonlin.ReLU method) (alpine.models.nonlin.nonlin.Sinc method) (alpine.models.nonlin.nonlin.Sine method) (alpine.models.nonlin.nonlin.Wavelet method) (alpine.models.siren.Siren method) (alpine.models.strainer.Strainer method) (alpine.models.wire.Wire method) (alpine.trainers.alpine_base.AlpineBaseModule method) (alpine.trainers.feature_extractor.FeatureExtractor method) (alpine.trainers.meta.MAML method) (alpine.trainers.pl.LightningTrainer method) (alpine.vis.clustering.KMeans method)

A

alpine module alpine.dataloaders module alpine.dataloaders.bio module alpine.dataloaders.coordinate_datasets module alpine.dataloaders.env module alpine.dataloaders.signal_dataloaders module alpine.losses module alpine.losses.loss_functions module alpine.metrics module alpine.metrics.ssim module alpine.models module alpine.models.ffn module alpine.models.nonlin module alpine.models.nonlin.nonlin module alpine.models.siren module alpine.models.strainer module alpine.models.utils module

alpine.models.wire module alpine.trainers module alpine.trainers.alpine_base module alpine.trainers.feature_extractor module alpine.trainers.meta module alpine.trainers.pl module alpine.utils module alpine.utils.checkers module alpine.utils.coords module alpine.utils.functional module alpine.utils.volutils module alpine.vis module alpine.vis.clustering module alpine.vis.geometry module alpine.vis.geometry.local_complexity module alpine.vis.geometry.partitions module alpine.vis.pca module AlpineBaseModule (class in alpine.trainers.alpine_base)

B

BatchedCoordinateDataset (class in alpine.dataloaders.coordinate_datasets) BatchedNDSignalLoader (class in alpine.dataloaders.signal_dataloaders) build_coordinate_tensors() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.coordinate_datasets.CoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method)

C

check_lossfn_types() (in module alpine.utils.checkers) check_opt_types() (in module alpine.utils.checkers) check_sch_types() (in module alpine.utils.checkers) check_tensor_dtype() (in module alpine.vis.pca) compile() (alpine.trainers.alpine_base.AlpineBaseModule method)

compute() (alpine.metrics.ssim.SSIM method) compute_pca_features() (in module alpine.vis.pca) compute_pca_features_batch() (in module alpine.vis.pca) compute_pca_layerwise() (in module alpine.vis.pca) configure_optimizers() (alpine.trainers.pl.LightningTrainer method) CoordinateDataset (class in alpine.dataloaders.coordinate_datasets)

D

device (alpine.vis.geometry.partitions.partitions attribute)

F

FeatureExtractor (class in alpine.trainers.feature_extractor) FFN (class in alpine.models.ffn) fit() (alpine.vis.clustering.KMeans method) fit_predict() (alpine.vis.clustering.KMeans method) fit_signal() (alpine.trainers.alpine_base.AlpineBaseModule method) (alpine.trainers.meta.MAML method) flatten_model() (in module alpine.vis.geometry.local_complexity) forward() (alpine.losses.loss_functions.MSELoss method) (alpine.models.ffn.FFN method) (alpine.models.ffn.PosEncoding method) (alpine.models.nonlin.nonlin.Gauss method) (alpine.models.nonlin.nonlin.HOSC method) (alpine.models.nonlin.nonlin.Nonlinear method) (alpine.models.nonlin.nonlin.ReLU method) (alpine.models.nonlin.nonlin.Sinc method) (alpine.models.nonlin.nonlin.Sine method) (alpine.models.nonlin.nonlin.Wavelet method) (alpine.models.siren.Siren method) (alpine.models.strainer.Strainer method) (alpine.models.wire.Wire method) (alpine.trainers.alpine_base.AlpineBaseModule method)

forward_w_features() (alpine.trainers.alpine_base.AlpineBaseModule method) forward_w_params() (alpine.trainers.meta.MAML method) functional_model_call() (in module alpine.utils.functional)

G

Gauss (class in alpine.models.nonlin.nonlin) generate_params() (alpine.trainers.meta.MAML method) get_coords2d() (in module alpine.utils.coords) get_coords3d() (in module alpine.utils.coords) get_coords3d_INT() (in module alpine.utils.coords) get_coords_nd() (in module alpine.models.utils) (in module alpine.utils.coords) get_coords_spatial() (in module alpine.models.utils) (in module alpine.utils.coords)

get_intersections_for_hulls() (in module alpine.vis.geometry.local_complexity) get_layer_intersections_batched() (in module alpine.vis.geometry.local_complexity) get_layers() (alpine.trainers.alpine_base.AlpineBaseModule method) get_linear_layer() (in module alpine.models.siren) (in module alpine.models.strainer) (in module alpine.models.wire) get_ortho_hull_around_samples() (in module alpine.vis.geometry.local_complexity) get_ortho_hull_around_samples_w_orig() (in module alpine.vis.geometry.local_complexity) get_partitions_from_inr() (alpine.vis.geometry.partitions.partitions static method) get_stacked_weights_and_bias_from_statedicts() (in module alpine.utils.functional)

H

higher_is_better (alpine.metrics.ssim.SSIM property)

HOSC (class in alpine.models.nonlin.nonlin)

K

KMeans (class in alpine.vis.clustering)

L

LightningTrainer (class in alpine.trainers.pl) load_encoder_weights() (alpine.models.strainer.Strainer method) load_nii_gz() (in module alpine.dataloaders.bio) load_nlcd() (in module alpine.dataloaders.env) load_pdb() (in module alpine.dataloaders.bio)

load_weights() (alpine.models.ffn.FFN method) (alpine.models.siren.Siren method) (alpine.models.strainer.Strainer method) (alpine.models.wire.Wire method) loss_fn_inner() (alpine.trainers.meta.MAML method) loss_fn_mse() (alpine.trainers.meta.MAML method)

M

MAML (class in alpine.trainers.meta) march_and_save() (in module alpine.utils.volutils) model_flatten_func() (alpine.vis.geometry.partitions.partitions method) module alpine alpine.dataloaders alpine.dataloaders.bio alpine.dataloaders.coordinate_datasets alpine.dataloaders.env alpine.dataloaders.signal_dataloaders alpine.losses alpine.losses.loss_functions alpine.metrics alpine.metrics.ssim alpine.models alpine.models.ffn alpine.models.nonlin alpine.models.nonlin.nonlin alpine.models.siren alpine.models.strainer alpine.models.utils alpine.models.wire alpine.trainers alpine.trainers.alpine_base alpine.trainers.feature_extractor alpine.trainers.meta alpine.trainers.pl alpine.utils alpine.utils.checkers alpine.utils.coords alpine.utils.functional alpine.utils.volutils alpine.vis alpine.vis.clustering alpine.vis.geometry alpine.vis.geometry.local_complexity alpine.vis.geometry.partitions alpine.vis.pca

MSELoss (class in alpine.losses.loss_functions)

N

n (alpine.vis.geometry.partitions.partitions attribute) NDSignalLoader (class in alpine.dataloaders.signal_dataloaders) nlcd_to_integer_index() (in module alpine.dataloaders.env) Nonlinear (class in alpine.models.nonlin.nonlin)

normalize() (in module alpine.utils) normalize_fn() (in module alpine.dataloaders.bio) (in module alpine.vis.pca) normalize_nd() (in module alpine.utils)

O

on_test_end() (alpine.trainers.pl.LightningTrainer method)

on_test_epoch_end() (alpine.trainers.pl.LightningTrainer method)

P

partitions (class in alpine.vis.geometry.partitions) plot_partitions() (in module alpine.vis.geometry.partitions)

PosEncoding (class in alpine.models.ffn) predict() (alpine.vis.clustering.KMeans method)

R

r (alpine.vis.geometry.partitions.partitions attribute) register_loss_function() (alpine.trainers.alpine_base.AlpineBaseModule method) ReLU (class in alpine.models.nonlin.nonlin)

remap_nlcd() (in module alpine.dataloaders.env) render() (alpine.trainers.alpine_base.AlpineBaseModule method) return_as_torch() (in module alpine.vis.pca)

S

sample_ortho_random() (in module alpine.vis.geometry.local_complexity) set_closure() (alpine.trainers.pl.LightningTrainer method) setup_init_lr() (alpine.trainers.meta.MAML method) setup_signal() (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method) show_partitions() (alpine.vis.geometry.partitions.partitions method) (in module alpine.vis.geometry.partitions)

Sinc (class in alpine.models.nonlin.nonlin) Sine (class in alpine.models.nonlin.nonlin) Siren (class in alpine.models.siren) split_generator() (in module alpine.vis.geometry.local_complexity) SSIM (class in alpine.metrics.ssim) Strainer (class in alpine.models.strainer)

T

test_step() (alpine.trainers.pl.LightningTrainer method)

train_dataloader() (alpine.trainers.pl.LightningTrainer method) training_step() (alpine.trainers.pl.LightningTrainer method)

U

unflat_index() (in module alpine.dataloaders.coordinate_datasets)

update() (alpine.metrics.ssim.SSIM method)

W

Wavelet (class in alpine.models.nonlin.nonlin)

Wire (class in alpine.models.wire) wrap_signal_instance() (in module alpine.utils.checkers)