Index

_

__getitem__() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method) __init__() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.coordinate_datasets.CoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method) (alpine.losses.loss_functions.MSELoss method) (alpine.models.nonlin.nonlin.Gauss method) (alpine.models.nonlin.nonlin.HOSC method) (alpine.models.nonlin.nonlin.ReLU method) (alpine.models.nonlin.nonlin.Sinc method) (alpine.models.nonlin.nonlin.Sine method) (alpine.models.nonlin.nonlin.Wavelet method) (alpine.models.siren.Siren method) (alpine.trainers.alpine_base.AlpineBaseModule method) (alpine.trainers.metalearn.MAMLMetaLearner method) (alpine.trainers.pl.LightningTrainer method)

A

alpine.dataloaders module alpine.dataloaders.bio module alpine.dataloaders.coordinate_datasets module alpine.dataloaders.dataio module alpine.dataloaders.env module alpine.dataloaders.signal_dataloaders module alpine.losses module alpine.losses.loss_functions module alpine.models.nonlin module alpine.models.nonlin.nonlin module alpine.models.siren module

alpine.trainers module alpine.trainers.alpine_base module alpine.trainers.base module alpine.trainers.metalearn module alpine.trainers.pl module alpine.utils module alpine.utils.checkers module alpine.utils.coords module alpine.utils.functional module alpine.utils.volutils module AlpineBaseModule (class in alpine.trainers.alpine_base)

B

BatchedCoordinateDataset (class in alpine.dataloaders.coordinate_datasets) BatchedNDSignalLoader (class in alpine.dataloaders.signal_dataloaders) build_coordinate_tensors() (alpine.dataloaders.coordinate_datasets.BatchedCoordinateDataset method) (alpine.dataloaders.coordinate_datasets.CoordinateDataset method) (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method)

C

check_lossfn_types() (in module alpine.utils.checkers) check_opt_types() (in module alpine.utils.checkers) check_sch_types() (in module alpine.utils.checkers)

compile() (alpine.trainers.alpine_base.AlpineBaseModule method) configure_optimizers() (alpine.trainers.metalearn.MAMLMetaLearner method) (alpine.trainers.pl.LightningTrainer method) CoordinateDataset (class in alpine.dataloaders.coordinate_datasets)

F

fit_signal() (alpine.trainers.alpine_base.AlpineBaseModule method) forward() (alpine.losses.loss_functions.MSELoss method) (alpine.models.nonlin.nonlin.Gauss method) (alpine.models.nonlin.nonlin.HOSC method) (alpine.models.nonlin.nonlin.ReLU method) (alpine.models.nonlin.nonlin.Sinc method) (alpine.models.nonlin.nonlin.Sine method) (alpine.models.nonlin.nonlin.Wavelet method) (alpine.models.siren.Siren method) (alpine.trainers.alpine_base.AlpineBaseModule method) (alpine.trainers.metalearn.MAMLMetaLearner method)

forward_w_features() (alpine.models.siren.Siren method) (alpine.trainers.alpine_base.AlpineBaseModule method) functional_model_call() (in module alpine.utils.functional)

G

Gauss (class in alpine.models.nonlin.nonlin) get_coords2d() (in module alpine.utils.coords) get_coords3d() (in module alpine.utils.coords) get_coords3d_INT() (in module alpine.utils.coords) get_coords_nd() (in module alpine.utils.coords)

get_coords_spatial() (in module alpine.utils.coords) get_inr_parameters() (alpine.trainers.metalearn.MAMLMetaLearner method) get_linear_layer() (in module alpine.models.siren) get_parameters() (alpine.trainers.metalearn.MAMLMetaLearner method) get_stacked_weights_and_bias_from_statedicts() (in module alpine.utils.functional)

H

HOSC (class in alpine.models.nonlin.nonlin)

I

inner_loop() (alpine.trainers.metalearn.MAMLMetaLearner method)

L

LightningTrainer (class in alpine.trainers.pl) load_nii_gz() (in module alpine.dataloaders.bio) load_nlcd() (in module alpine.dataloaders.env)

load_pdb() (in module alpine.dataloaders.bio) load_weights() (alpine.models.siren.Siren method) loss_fn_mse() (alpine.trainers.metalearn.MAMLMetaLearner method)

M

MAMLMetaLearner (class in alpine.trainers.metalearn) march_and_save() (in module alpine.utils.volutils) module alpine.dataloaders alpine.dataloaders.bio alpine.dataloaders.coordinate_datasets alpine.dataloaders.dataio alpine.dataloaders.env alpine.dataloaders.signal_dataloaders alpine.losses alpine.losses.loss_functions alpine.models.nonlin alpine.models.nonlin.nonlin alpine.models.siren alpine.trainers alpine.trainers.alpine_base alpine.trainers.base alpine.trainers.metalearn alpine.trainers.pl alpine.utils alpine.utils.checkers alpine.utils.coords alpine.utils.functional alpine.utils.volutils

mse_loss() (alpine.trainers.metalearn.MAMLMetaLearner method) MSELoss (class in alpine.losses.loss_functions)

N

NDSignalLoader (class in alpine.dataloaders.signal_dataloaders) nlcd_to_integer_index() (in module alpine.dataloaders.env)

normalize() (in module alpine.utils) normalize_fn() (in module alpine.dataloaders.bio) normalize_nd() (in module alpine.utils)

O

on_test_end() (alpine.trainers.pl.LightningTrainer method)

on_test_epoch_end() (alpine.trainers.pl.LightningTrainer method) outer_loop() (alpine.trainers.metalearn.MAMLMetaLearner method)

R

register_loss_function() (alpine.trainers.alpine_base.AlpineBaseModule method) ReLU (class in alpine.models.nonlin.nonlin)

remap_nlcd() (in module alpine.dataloaders.env) render() (alpine.trainers.alpine_base.AlpineBaseModule method) render_inner_loop() (alpine.trainers.metalearn.MAMLMetaLearner method)

S

set_closure() (alpine.trainers.pl.LightningTrainer method) set_parameters() (alpine.trainers.metalearn.MAMLMetaLearner method) setup_signal() (alpine.dataloaders.signal_dataloaders.BatchedNDSignalLoader method) (alpine.dataloaders.signal_dataloaders.NDSignalLoader method)

Sinc (class in alpine.models.nonlin.nonlin) Sine (class in alpine.models.nonlin.nonlin) Siren (class in alpine.models.siren) squeeze_output() (alpine.trainers.metalearn.MAMLMetaLearner method)

T

test_step() (alpine.trainers.pl.LightningTrainer method)

train_dataloader() (alpine.trainers.pl.LightningTrainer method) training_step() (alpine.trainers.pl.LightningTrainer method)

U

unflat_index() (in module alpine.dataloaders.coordinate_datasets)

W

Wavelet (class in alpine.models.nonlin.nonlin)

wrap_signal_instance() (in module alpine.utils.checkers)